rs3705141 SNP Detail

Summary

• ID
  rs3705141
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75413682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGCAGCCC CAAGGCTAAA
  TGACAGCATC TCCGTTATTG TTGGGAGCGT GAGGACTCCA GGAAATGGGT GGATGACTGT
  TGTCTGAAGG GATCCAGCCT GTTGGAAGGA CTGACCGCTT CCTGAAGGAT TCACTACTCT
  TCTTTACAGG AAATGTTTAA ATAATTGAAC TCTCTAATTG GGTTAAAGAG ATCCTGAACA
  Y
  GTGGGTGTTC TATAAGTAAA GGAATGAGTA AATAATATAG TAACCTTTCT CTATGGGCCC
  TGTGCTTAGA GAGATCGTTT TGTTTCGTTT ATACAGATAT GATCATCATT GAGAGAGTGG
  GAGAGGGATT GGTTTCAAAT GGGGTGAGAG AGAGAGGGAG GTGGGATAGG CATGTTCGCC
  CATGAAAATC CCTTACAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5081371	WI_WGS_14_66092919	WI	MOUSE	f	SNP	T			C
ss139749927	ENSMUSSNP2144332	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3705141					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75413682 () rs orientation: forward

Symbol	Name	Function Class
Lcp1	lymphocyte cytosolic protein 1	within coordinates
Rr369874	regulatory region 369874	1768 bp upstream
Rr404213	regulatory region 404213	440 bp upstream
Rr495436	regulatory region 495436	837 bp distal
Tssr4478	transcription start site region 4478	1290 bp downstream
Tssr126621	transcription start site region 126621	1264 bp downstream
Tssr126622	transcription start site region 126622	1234 bp downstream
Tssr126623	transcription start site region 126623	347 bp upstream
Tssr126624	transcription start site region 126624	391 bp upstream
Tssr126625	transcription start site region 126625	550 bp upstream
Tssr126626	transcription start site region 126626	565 bp upstream
Tssr126627	transcription start site region 126627	581 bp upstream
Tssr126628	transcription start site region 126628	892 bp upstream
Tssr126629	transcription start site region 126629	1567 bp upstream
Tssr126630	transcription start site region 126630	1606 bp upstream
Tssr129768	transcription start site region 129768	1435 bp upstream
Tssr129769	transcription start site region 129769	338 bp downstream
Tssr129770	transcription start site region 129770	407 bp downstream