rs37052085 SNP Detail

Summary

• ID
  rs37052085
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40366654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGACGCC AAGGTGACGC
  GATAAGCTCC TTCTTTGATC CCGGAAGTTT CCACCAGAAT GCCCTAGGGT CCTAGACCGC
  CCTGGGGAGG GGCGAGAGGT TCAGGGGAAG ACTGCTGGAG AGAAACTGGA ACCTACCTGC
  TTTCACTGCA TTCTTTCCGC TCCCTCACCC TCAGCCACTT GCGGAGCAGG AAGCGTTTTC
  K
  GCGCGGGGAC GCACTGGGTG TGGAGCAGTT GGACCACGGG GTGTCCTCGT CGCTGGAGGG
  CGTAATCTCA ATGGACGGCA GTTGCAGGAA CTCCTTGCCG GGGGCCAGGA CGCCGGGTAG
  GTCCGGGGCT ACCAACCCCG CCTCCAGGCT CTGCTCCTGC ACGTTCTTCA TCCGGCGCAT
  CTTAAAGCGC CGGCGGCGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50677588	NES14010796	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37052085					SNP	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50677588	NES14010796	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40366654 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21594	CpG island 21594	within coordinates
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676839	regulatory region 676839	46 bp proximal
Rr676840	regulatory region 676840	302 bp proximal
Rr676841	regulatory region 676841	477 bp proximal
Tssr84449	transcription start site region 84449	37 bp downstream
Tssr84450	transcription start site region 84450	533 bp upstream
Tssr88934	transcription start site region 88934	within coordinates
Tssr88935	transcription start site region 88935	60 bp downstream
Tssr88936	transcription start site region 88936	85 bp downstream
Tssr88937	transcription start site region 88937	148 bp downstream
Tssr88938	transcription start site region 88938	416 bp downstream
Tssr88939	transcription start site region 88939	423 bp downstream
Tssr88940	transcription start site region 88940	479 bp downstream
Tssr88941	transcription start site region 88941	761 bp downstream
Tssr88942	transcription start site region 88942	779 bp downstream
Tssr88943	transcription start site region 88943	794 bp downstream
Tssr88944	transcription start site region 88944	837 bp downstream
Tssr88945	transcription start site region 88945	872 bp downstream
Tssr88946	transcription start site region 88946	954 bp downstream
Tssr88947	transcription start site region 88947	982 bp downstream
Tssr88948	transcription start site region 88948	1029 bp downstream