rs37052164 SNP Detail

Summary

• ID
  rs37052164
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:32306091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGCACTCC CAGGGCTATG
  AGATTCCTGT GCTTCTCCAC AGGACTTAAG AGGACTACCT GTCCTCTAAG AAGGTTTTCT
  CACACTACCA AGAGGAGACC CTGTCACTCC AACCTTGCTC CTGTGCCCCC CTCATGCTCC
  TGCATTCCTG GCCCCAACGG AGTCAACTGT CCTGGTAAAA AGGTTCCACA GATGCGTGAC
  Y
  CAGAGCTGCG CTGACAGATA TAGAACCAGA GCATCTCCCT TCAAAGACAG CATAGCATGA
  GACCCAAACA AAAGAGTCAC CCAAACAAAA GAGCACAACA CAGAGAGGCC CCCGAGACCG
  TGTATACCAG TTTACTCTGA CTACACTAAA ACAGATGGTT CCAGACTCAG AAAGGCTTTT
  CTCAAAATAC TCAAATTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss51582897	NES14855679	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs37052164					SNP	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51582897	NES14855679	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:32306091 () rs orientation: forward

Symbol	Name	Function Class
Plxna4	plexin A4	Intron
Rr628093	regulatory region 628093	1622 bp distal
Rr628094	regulatory region 628094	573 bp distal
Rr628095	regulatory region 628095	855 bp distal