rs37052631 SNP Detail

Summary

• ID
  rs37052631
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75415603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACCTTGAG GTCAAATTTA
  CCAAGAATTT ACTGTAATTG GCTTCTATTA AATGAACTTT TTAAAAAAGG ATGTCTGCAT
  AGCTAAATTT AAATGGAATT CACCACTTTT TTCTATGAAG AGTGAATTTC TGGAAGTTTT
  GGTGTCTGGC CATTAATCTT TCTTTACTTG CAGTACTCAT CTGCCTGGCT GGTTTCAAGG
  Y
  AAAAAGTAAA ACTAACCCAA AAAACAGTGG GGTCTCCGGA GGAGAGGCTT AAGGTCCAGA
  AAATACTAGG GGGAAAAAAA ACGTACTCCA AAGATTTTCA TCAGAGATAG TAATAAGAAT
  GTAATTTAAA AAAAAATGCT GTGAAGGCTT GTCAACATTT CCCCCTTACA TTTGGGAAGG
  AATAACACTG AATATGGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51533164	NES14628183	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37052631					SNP	C	C	C	C	C	C	T	C	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51533164	NES14628183	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75415603 () rs orientation: forward

Symbol	Name	Function Class
Lcp1	lymphocyte cytosolic protein 1	within coordinates
Rr369874	regulatory region 369874	within coordinates
Rr404213	regulatory region 404213	1181 bp downstream
Rr404214	regulatory region 404214	1528 bp upstream
Tssr4479	transcription start site region 4479	1570 bp downstream
Tssr126623	transcription start site region 126623	1558 bp downstream
Tssr126624	transcription start site region 126624	1520 bp downstream
Tssr126625	transcription start site region 126625	1366 bp downstream
Tssr126626	transcription start site region 126626	1341 bp downstream
Tssr126627	transcription start site region 126627	1259 bp downstream
Tssr126628	transcription start site region 126628	1009 bp downstream
Tssr126629	transcription start site region 126629	318 bp downstream
Tssr126630	transcription start site region 126630	297 bp downstream
Tssr126631	transcription start site region 126631	1415 bp upstream
Tssr126632	transcription start site region 126632	1640 bp upstream
Tssr129769	transcription start site region 129769	1560 bp upstream
Tssr129770	transcription start site region 129770	1481 bp upstream
Tssr129771	transcription start site region 129771	238 bp downstream
Tssr129772	transcription start site region 129772	1094 bp downstream