rs37053061 SNP Detail

Summary

• ID
  rs37053061
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:178232483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCTTTCT TTTCCTTTCT
  TTCTTTCTCT TTCTTTTTGT TTTATTGTTT TGTTTTTGTT TTTGTTTTTG TTTTTTTGAG
  ACAGGGTTTC TCTGTGTAGC CCTGGCTGTC CTGGAACTCA CTCTGTAGAC CAGGCTGGCC
  TCGAACTCAG AAATCTGCCT GCCTCTGCCT CCTGAGTGCT GGGGAAATTT GCTTGATATG
  Y
  ACCATTTTCT GATTATTCAA ATTGTAGTTA GACACTTCAT CAAATCTTTA TTGCCTATAG
  AAAAAAATAT TTTAATGAAG AGTACAGTTG GCCTGCTTTG AGGGTTCATT CACTGAGATT
  ACAGAACTTC GATGAATAAA AACTAATAAT AAAAAATAAA ATACTGAGAT GTAAAGTGAA
  TAAATAACTA TATTAAAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51413012	NES14449892	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37053061					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51413012	NES14449892	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:178232483 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1092	CpG island 1092	709 bp proximal
Efcab2	EF-hand calcium binding domain 2	1167 bp upstream
Gm70920	predicted gene, 70920	992 bp downstream
Gm70923	predicted gene, 70923	1571 bp upstream
Rr29069	regulatory region 29069	317 bp proximal
Rr372517	regulatory region 372517	303 bp upstream
Tssr10392	transcription start site region 10392	1099 bp upstream
Tssr10393	transcription start site region 10393	1113 bp upstream
Tssr10394	transcription start site region 10394	1120 bp upstream
Tssr10395	transcription start site region 10395	1134 bp upstream
Tssr10396	transcription start site region 10396	1154 bp upstream
Tssr10397	transcription start site region 10397	1577 bp upstream
Tssr15493	transcription start site region 15493	1497 bp downstream