rs37053961 SNP Detail

Summary

• ID
  rs37053961
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:128071878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGGTTGC CAGTAGTTCA
  GGGGAAGGAG TACTGCAGTT TAAGGGACGG GGGACTGAAA TTTAGGGAGG GAGGACTACA
  GCTTAGGGGA GGGGAGGACT GAAGATTAGT AGGGAGGACG GGCAGACAAT AGCTAAGACG
  GGCAGCACTA CAGGCTGGTG CAAAAGTTGA ACAAGGCAGT AGGATCATTT CACAACCCAA
  K
  GAGTGAGCCA AGGACTGCAC TGCATCCTTT AAAAGGGTCA TAGTGAGAGC AGTGGCACGG
  GCATGTAATC CCAATATTTG GGAGGCAGGT CATCCTTGGC TACACAGCAA GTCAGATGTC
  AGCCTGGGCT ATGTGAGACC CTATCTCAAA AACTAAGAAC AAATAACAAC AACAAAGAGC
  CCTGAAACAG TCACACGGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51863759	NES14893030	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37053961					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51863759	NES14893030	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:128071878 () rs orientation: forward

Symbol	Name	Function Class
Gm55163	predicted gene, 55163	2 bp downstream
Rr639180	regulatory region 639180	1828 bp distal
Rr639181	regulatory region 639181	267 bp proximal
Rr639182	regulatory region 639182	475 bp proximal
Tspan9	tetraspanin 9	within coordinates