rs37054068 SNP Detail

Summary

• ID
  rs37054068
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:59995528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGAAACA TGTAAATGAA
  ATCCCTGGGA AATGAGACTC AAATAAAACA TTTAAAATTA CATAGAACTT TCCATTGCAG
  AGTCAGGAAG GATTTCCTGG AGGGGTCGGC AGAGTCGGGA ATGGACAAGT CAAATGTGGC
  TTTCAATGTG AAGAAACTAC AGATTTAGGA TAAAATAGTT TTTCTCTCCT CAAATCCATG
  Y
  AAAGTACACA GGGCACAGCA CAGCCGCATA GGCAGCCAAT GAGCTGCTGG CAACATCGCC
  CCCTGGTGTT CATCTGGTGG TAGCCTCTCT TTTCTTTTTT CCATGCTCCA CTATGTACAT
  TTGATTCTTT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGC ACATGTGCAT GTGAATGTCT
  TGTTTTGTTT TTTAAATTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52023989	NES15040348	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37054068					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52023989	NES15040348	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:59995528 () rs orientation: forward

Symbol	Name	Function Class
Rr196116	regulatory region 196116	within coordinates
Rr204367	regulatory region 204367	within coordinates
Rr209877	regulatory region 209877	1274 bp proximal
Thsd4	thrombospondin, type I, domain containing 4	within coordinates