rs3705428 SNP Detail

Summary

• ID
  rs3705428
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:127386619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGC TACATTACTT GGTGGAAATG
  R
  CCTGGGTCTT TCTGAACACG AGAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5081662	WI_WGS_1_128250607	WI	MOUSE	f	SNP	G			A
ss145443495	ENSMUSSNP2970825	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3705428					SNP	G	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:127386619 () rs orientation: forward

Symbol	Name	Function Class
Gm41947	predicted gene, 41947	within coordinates
Mgat5	mannoside acetylglucosaminyltransferase 5	within coordinates
Rr11973	regulatory region 11973	within coordinates
Rr19047	regulatory region 19047	1619 bp distal
Rr30263	regulatory region 30263	within coordinates
Rr396245	regulatory region 396245	135 bp upstream