rs3705548 SNP Detail

Summary

• ID
  rs3705548
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37928762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTC CTATGCTATT TCCTCACTTA
  Y
  AAGTCTTGTC ACGGCATATT TGAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss5081783	WI_WGS_3_37759857	WI	MOUSE	f	SNP	T						C
ss45461926	mCV24775219	ABI	CRAMUS_MOUSE	f	SNP		T	T				C	T
ss46916078	NES10815604	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T		T	C	C		C	C	C		T
ss134816584	ENSMUSSNP3380505	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					T
ss320713680	CHEV_3_37773535	CHEVERUD	SCREENING_POP	f	SNP											T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs3705548					SNP	T	T	T	C	T	T	C	T	C	C	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46916078	NES10815604	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37928762 () rs orientation: forward

Symbol	Name	Function Class
Rr575579	regulatory region 575579	101 bp proximal
Rr575580	regulatory region 575580	1309 bp proximal
Rr575581	regulatory region 575581	1717 bp proximal