rs3705617 SNP Detail

Summary

• ID
  rs3705617
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37928798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCCAAAGGC AGCAATTTCA ACACAGGCAA CAGTGACAAG
  TGTCCTATGC TATTTCCTCA CTTACAAGTC TTGTCACGGC ATATTTGAAT CTCCAGGTAC
  Y
  ATTGAAGCCA AAATGTCTAG AGTCCAGTTT CTGAGGCTGG AGTCAGCTCT GTAGTGTGTC
  AGTCACCTGG CTTTGTAGGA GCAGTCTTGG AGTGATGTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss5081853	WI_WGS_3_37759893	WI	MOUSE	f	SNP	C							T
ss45497054	mCV24775220	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		C
ss46916081	NES10815605	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	T	C	C		C	C	T	T		T	T	T		C
ss134816587	ENSMUSSNP5955482	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
ss320713681	CHEV_3_37773571	CHEVERUD	SCREENING_POP	f	SNP													C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs3705617					SNP	C	C	C	C	T	C	C	T	C	C	T	T	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46916081	NES10815605	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37928798 () rs orientation: forward

Symbol	Name	Function Class
Rr575579	regulatory region 575579	65 bp proximal
Rr575580	regulatory region 575580	1273 bp proximal
Rr575581	regulatory region 575581	1681 bp proximal