rs3705659 SNP Detail

Summary

• ID
  rs3705659
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137089748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGT GTCCCCACCA CACCCGTTGT
  K
  CAGCAATGTT TTAAAATTTA CATTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J
ss5081896	WI_WGS_5_135682883	WI	MOUSE	f	SNP				G	T
ss45818653	mCV25093759	ABI	CRAMUS_MOUSE	f	SNP	G	G	G		T	G
ss144525156	ENSMUSSNP4866774	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J
rs3705659					SNP	G	G	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137089748 () rs orientation: forward

Symbol	Name	Function Class
Rr622785	regulatory region 622785	960 bp proximal
Rr622786	regulatory region 622786	1377 bp proximal
Serpine1	serine (or cysteine) peptidase inhibitor, clade E, member 1	610 bp downstream
Tssr53888	transcription start site region 53888	1032 bp downstream
Tssr53889	transcription start site region 53889	1155 bp downstream
Tssr53890	transcription start site region 53890	1758 bp downstream