rs37059572 SNP Detail

Summary

• ID
  rs37059572
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45512337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCAGTCG AGTTGGTTCT
  GGCTATGCCT GGTTTCTGCA GGTGCACAGG GTATATAAAG GAAGGAATAG GACAATGTGG
  ACAGTGAGGT CACAGTGTGG ACAGGGAGGT CACAGTGTGG ACAGGACTGT CCTTGCCCCA
  TGCTGCTACA TGCTCTGGTG CCCTCCTCCT GGGAGAGCAG TTCGGTTCCT AAAGGAAAAA
  Y
  TGTCTTGGTA TCTACACAAC AGGACCTGAT GCACACACAG CAGGAACTGG AGTGGGGGGC
  AGGGTGTAGG ACTGGAAAAG GGGTTCAGGA GAAGGGAGCA GACTGGGGAC AGGATGGATG
  ACATGACACC GATGTGGGAA ATGAGAACAG AAACCGTCCC AACTGGTGGG AGATACCTGC
  CTTGCCTGAC AGCAGTGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52012076	NES15026826	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	C	C	T	T	C	C	T	C
ss136415407	ENSMUSSNP3057337	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37059572					SNP	T	T	C	C	C	C	C	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52012076	NES15026826	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45512337 () rs orientation: forward

Symbol	Name	Function Class
Dscaml1	DS cell adhesion molecule like 1	within coordinates
Rr195123	regulatory region 195123	264 bp proximal
Rr200398	regulatory region 200398	1537 bp distal
Rr200399	regulatory region 200399	within coordinates