rs3706031 SNP Detail

Summary

• ID
  rs3706031
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37928816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAACACAGGC AACAGTGACA AGTGTCCTAT GCTATTTCCT
  CACTTACAAG TCTTGTCACG GCATATTTGA ATCTCCAGGT ACTATTGAAG CCAAAATGTC
  W
  AGAGTCCAGT TTCTGAGGCT GGAGTCAGCT CTGTAGTGTG TCAGTCACCT GGCTTTGTAG
  GAGCAGTCTT GGAGTGATGT CCCAACTGTC GGCTCCTTC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss5082269	WI_WGS_3_37759911	WI	MOUSE	f	SNP	A					T
ss46916084	NES10815606	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	A	T		T	A	T	T		T	T	T		T
ss134816590	ENSMUSSNP876380	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						A
ss320713682	CHEV_3_37773589	CHEVERUD	SCREENING_POP	f	SNP											T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs3706031					SNP	A	T	T	A	T	T	T	A	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46916084	NES10815606	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37928816 () rs orientation: forward

Symbol	Name	Function Class
Rr575579	regulatory region 575579	47 bp proximal
Rr575580	regulatory region 575580	1255 bp proximal
Rr575581	regulatory region 575581	1663 bp proximal