rs37061245 SNP Detail

Summary

• ID
  rs37061245
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44382468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACACCAT CCATCTTGAG
  ACCATGATAC CTTTTCTACT CTGGGGACTT GCAAACCTCT CTGGACTATT AGCTTTCATC
  CAAGTGTGAG AAAGCACCCA GGGGCTTCCT GTCCCCTGAA GGCAGGACAT TCCAGGAAGA
  GGAGTGAGCA TGACTTCCCA GGGCTGGGGT AACAGTTCTT CATGTACCTG TGTGCTGCGT
  Y
  CATGTGGCCA CCATGTGACA GTGGAGACCT GGCCTGTCCC CTACCTAGCA GTCAGCTGAT
  GCTGTGTTTG ACTCAATGTT AGATTCTTGG TTCCCTGCTG CCAGAGTGTA ACCTCAAGTT
  ACCCTCAGGA AGGGTAGGCG GGTTACTGGG GTATGACTCA GCCCTTGTCA TTTCTAAATT
  TGTTTTCTCT TAATCTCAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50801836	NES13525200	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37061245					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50801836	NES13525200	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44382468 () rs orientation: forward

Symbol	Name	Function Class
Rr548236	regulatory region 548236	within coordinates
Rr548237	regulatory region 548237	633 bp proximal
Scd1	stearoyl-Coenzyme A desaturase 1	421 bp downstream
Tssr159446	transcription start site region 159446	553 bp downstream
Tssr159447	transcription start site region 159447	730 bp downstream
Tssr159448	transcription start site region 159448	762 bp downstream
Tssr159449	transcription start site region 159449	814 bp downstream
Tssr159450	transcription start site region 159450	841 bp downstream
Tssr159451	transcription start site region 159451	913 bp downstream
Tssr159452	transcription start site region 159452	1203 bp downstream
Tssr159453	transcription start site region 159453	1262 bp downstream
Tssr159454	transcription start site region 159454	1294 bp downstream
Tssr159455	transcription start site region 159455	1587 bp downstream
Tssr159456	transcription start site region 159456	1709 bp downstream
Tssr159457	transcription start site region 159457	1753 bp downstream
Tssr159458	transcription start site region 159458	1783 bp downstream
Tssr159459	transcription start site region 159459	1873 bp downstream
Tssr159460	transcription start site region 159460	1910 bp downstream
Tssr159461	transcription start site region 159461	1969 bp downstream
Tssr159462	transcription start site region 159462	1997 bp downstream