rs3706293 SNP Detail

Summary

• ID
  rs3706293
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106765720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCT TTAGACTTAA CAGCAGCTCA
  R
  GAACCTTCAG CCCCTGCTAC TGGAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	LG/J	SM/J
ss5082532	WI_WGS_9_107751171	WI	MOUSE	f	SNP			G	A
ss136941078	ENSMUSSNP5920725	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss323187621	CHEV_9_106790852	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	LG/J	SM/J
rs3706293					SNP	G	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106765720 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22277	CpG island 22277	844 bp distal
Manf	mesencephalic astrocyte-derived neurotrophic factor	232 bp downstream
Rbm15b	RNA binding motif protein 15B	1446 bp upstream
Rr401656	regulatory region 401656	1043 bp downstream
Rr686406	regulatory region 686406	1230 bp distal
Rr686407	regulatory region 686407	603 bp distal
Rr686408	regulatory region 686408	485 bp distal
Tssr86942	transcription start site region 86942	1660 bp upstream
Tssr91351	transcription start site region 91351	1427 bp upstream
Tssr91352	transcription start site region 91352	1409 bp upstream