rs37063317 SNP Detail

Summary

• ID
  rs37063317
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:132284954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCCTGCC CTCTGGCCCC
  AAGGCTGGGG ACCCTCCCCT TTCTGCACTC TCTAGGCTCA GCAGGGCCTC CCACTGGCTT
  TTATCCAGAC CATCTCCATG GGAGGAAACT GTGGCTGCCT CCAGGATGGG CTCTTCCCTA
  GGGAAACTGA GACTGGCCTT CTATCTTAGT GGCTTACATG ACTAGAGCAT CCTCTTGTCA
  R
  CCCAGAAAAG TCCCATGTGG CTGCAAAATA ATTCAAATAA TGCAGCCCTG GTGTCTCCCC
  ACTGCTCCAT TTGGCTGAGA GTGTCCCTGC TCCCTCCAGC CCAGAGCACC CTCTCTGAAA
  CCTTCAGGCC GAAAGGGAGA TGGTGTCAGA CAGAAGCAGT GAAAAGAAGG GACAGTTAGG
  GGCCAAACAG GTCACATGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51373314	NES14476214	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37063317					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51373314	NES14476214	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:132284954 () rs orientation: forward

Symbol	Name	Function Class
Tmcc2	transmembrane and coiled-coil domains 2	within coordinates
Tssr13633	transcription start site region 13633	259 bp downstream
Tssr13634	transcription start site region 13634	325 bp downstream
Tssr13635	transcription start site region 13635	408 bp downstream
Tssr13636	transcription start site region 13636	1027 bp downstream
Tssr13637	transcription start site region 13637	1684 bp downstream