rs3706448 SNP Detail

Summary

• ID
  rs3706448
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78353917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATAAGAG AGGCCCTGCT
  TCAAAACAAG GTAGAAGGAG ATCACTGGCT CCTCAGAACT TGACATTTGT GTCCCAAATG
  TTCACCAAGA CATACACACT TATGCTCACC TCTCTTTCTC CTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CATCTAAAAA CACCTACCAT CAACAAACAA GCCAATATTG GATACAATGT
  R
  GAAGACTTTT TTTTTTCATT TTTTCTCTTT TGCTTATTTT CACTTTCTCT CAGAGACAAG
  ATCTCTCTAC ATAACCCTGA CTATCCAGGA ACTCACCGTG TAGTTCATGC TGACCTCAGA
  CTCAGAGCTC TGCCTGAGTT GTGCACCATC GTGCCCAGCT AAGCAAATAT ATTGTTAAGG
  GGACTGGACA GATGATTGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss5082687	WI_WGS_9_79210494	WI	MOUSE	f	SNP	G						A
ss61427232	NES16810935	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	A		G	A	A	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs3706448					SNP	G	A	A	A	G	A	A	G	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61427232	NES16810935	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78353917 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22068	CpG island 22068	1345 bp proximal
Gm17324	predicted gene, 17324	1230 bp downstream
Mto1	mitochondrial tRNA translation optimization 1	1455 bp upstream
Rr401544	regulatory region 401544	1402 bp upstream
Rr683554	regulatory region 683554	1083 bp proximal
Tssr86287	transcription start site region 86287	1557 bp upstream