rs37064876 SNP Detail

Summary

• ID
  rs37064876
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70702870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGGTAAA GAACTCTCAG
  TTTTCGTTTT TACTACCTCT GTCACCCAAG AGTTGGCATC TCAACAGAGG GGACTTTCCG
  AGAGGCCATC TGGCAGTTGC TTAAGATCAG AAGTGAAGTC TGCCAGTTCC TCCCAGGCAG
  GTGGCCCAGA TTACAGTTGA CCTGTTCTGG TGTGGCTAAA AATTGTCCCA TGTGGTTACA
  R
  ACCATTAGAC CAGGGTCTGA TGAATTGCTC AGAATATTTC TGGACACCCA AATACAGACC
  CTGGCTTAAG GCCCTGTCCA TACAGTAGGT TTAGCTTGGC TACACCAAAG GAAGCCATAC
  AGAGGCTAAT ATCAGAGTAT TCTTGGAAGA GACAGGAGAA AATGAAAGCC AGTTTCTGCT
  CTTACCTTAT GTGCTTGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51676671	NES14820443	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A		G	A	A	A		A
ss321815794	CHEV_6_70675880	CHEVERUD	SCREENING_POP	f	SNP									G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37064876					SNP	A	A	A	A	A	A	A	A	G	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676671	NES14820443	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70702870 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	560 bp downstream
Igk	immunoglobulin kappa chain complex	within coordinates
Igkc	immunoglobulin kappa constant	549 bp upstream
Igkj5	immunoglobulin kappa joining 5	1963 bp downstream
Rr158	regulatory region 158	65 bp proximal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	451 bp downstream
Rr399685	regulatory region 399685	39 bp downstream
Rr399686	regulatory region 399686	625 bp upstream
Tssr1880	transcription start site region 1880	964 bp upstream
Tssr56955	transcription start site region 56955	1986 bp downstream
Tssr56956	transcription start site region 56956	53 bp downstream
Tssr56957	transcription start site region 56957	544 bp upstream
Tssr56958	transcription start site region 56958	591 bp upstream
Tssr56959	transcription start site region 56959	609 bp upstream
Tssr56960	transcription start site region 56960	632 bp upstream
Tssr56961	transcription start site region 56961	646 bp upstream
Tssr56962	transcription start site region 56962	654 bp upstream
Tssr56963	transcription start site region 56963	703 bp upstream
Tssr56964	transcription start site region 56964	718 bp upstream
Tssr56965	transcription start site region 56965	724 bp upstream
Tssr56966	transcription start site region 56966	735 bp upstream
Tssr56967	transcription start site region 56967	750 bp upstream
Tssr56968	transcription start site region 56968	774 bp upstream
Tssr56969	transcription start site region 56969	810 bp upstream
Tssr56970	transcription start site region 56970	823 bp upstream
Tssr56971	transcription start site region 56971	843 bp upstream
Tssr56972	transcription start site region 56972	869 bp upstream
Tssr56973	transcription start site region 56973	907 bp upstream
Tssr56974	transcription start site region 56974	939 bp upstream
Tssr56975	transcription start site region 56975	972 bp upstream
Tssr61321	transcription start site region 61321	596 bp downstream
Tssr61322	transcription start site region 61322	761 bp downstream
Tssr61323	transcription start site region 61323	776 bp downstream
Tssr61324	transcription start site region 61324	866 bp downstream
Tssr61325	transcription start site region 61325	932 bp downstream
Tssr61326	transcription start site region 61326	967 bp downstream
Tssr61327	transcription start site region 61327	981 bp downstream
Tssr61328	transcription start site region 61328	1072 bp downstream