rs37064931 SNP Detail

Summary

• ID
  rs37064931
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127583109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACGACGGA ACGGACAACT
  AGAACATCCT TGGCAACTTC TACAGTCACT CTGGTTCTCT TCGCTCTGCT CTCCATCGCT
  CTTCTCCCTA AATAGAAGCC CTCTCCTACC TCTCTCCACA GCTGCCTTCT GTATTTCCAT
  CCCAACCTCC TTGAACTTCG GAAATTAGTG TCCGGGTATC CAGTCGGTCC TCTGAAAGAC
  Y
  CTCACGAGGC TGTTGCCCCT GTCACCACTC AGCACTAGGT GTTGGGCGAA GAAAGGTTGG
  TTAGCCGGAA GTGACAGGTG AGGAGGCTTC TGGACGGCTT GTGCGCAGGG TGGCAGCATC
  CCGAGGAAGG TTCCAATCCT GTCTGGCTGG ACTCTCATCC GCTCCCCACG CCTCGGGTTG
  AGCAGAGAGT AGCCACTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51618329	NES14659896	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37064931					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51618329	NES14659896	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127583109 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13800	CpG island 13800	37 bp proximal
Cpgi13801	CpG island 13801	1178 bp proximal
Gm56817	predicted gene, 56817	within coordinates
Gm65064	predicted gene, 65064	1667 bp downstream
Gm65225	predicted gene, 65225	933 bp downstream
Rr584859	regulatory region 584859	1146 bp distal
Rr584860	regulatory region 584860	within coordinates
Rr584861	regulatory region 584861	338 bp proximal
Rr584862	regulatory region 584862	463 bp proximal
Rr584863	regulatory region 584863	787 bp proximal
Rr584864	regulatory region 584864	1355 bp proximal
Tifa	TRAF-interacting protein with forkhead-associated domain	within coordinates
Tssr31594	transcription start site region 31594	258 bp downstream
Tssr31595	transcription start site region 31595	246 bp downstream
Tssr31596	transcription start site region 31596	213 bp downstream
Tssr31597	transcription start site region 31597	173 bp downstream
Tssr31598	transcription start site region 31598	150 bp downstream
Tssr31599	transcription start site region 31599	342 bp upstream
Tssr31600	transcription start site region 31600	406 bp upstream
Tssr31601	transcription start site region 31601	440 bp upstream
Tssr31602	transcription start site region 31602	481 bp upstream
Tssr31603	transcription start site region 31603	526 bp upstream
Tssr31604	transcription start site region 31604	643 bp upstream
Tssr31605	transcription start site region 31605	1142 bp upstream
Tssr31606	transcription start site region 31606	1340 bp upstream
Tssr31607	transcription start site region 31607	1578 bp upstream
Tssr31608	transcription start site region 31608	1646 bp upstream
Tssr31609	transcription start site region 31609	1697 bp upstream
Tssr31610	transcription start site region 31610	1806 bp upstream
Tssr31611	transcription start site region 31611	1914 bp upstream
Tssr35598	transcription start site region 35598	282 bp downstream
Tssr35599	transcription start site region 35599	366 bp downstream
Tssr35600	transcription start site region 35600	383 bp downstream
Tssr35601	transcription start site region 35601	409 bp downstream
Tssr35602	transcription start site region 35602	741 bp downstream