rs37065539 SNP Detail

Summary

• ID
  rs37065539
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:52520837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCAGGAG CACACGGGTA
  GGAAAAGGCA AGACTGAAGG CACACCACCA TGCCTGCCCC ACACCTTGTG TGGTAGCACA
  GCTCTGGAGA GAGTGTCTCA CTCAGCTGCC AAGTGCCCAT GTCTGTCTTA AACACATACC
  AACATCTAGC AAAAGAAGTC AGTAGCTGAG GGAGTCAGGG GAAAAGAAAA GGCCCTTCGA
  K
  AAAGAGACCA TTGTGCCTCT TCAAACAAGA CTATTTTCTT TCTCATTTCT GCTCCCCTGC
  TGCGTTCTGA AGGTCACTGA CTGCGTCTGC ACGAGCCAGG GAAGTCACGA AAGACATACT
  TGGCAAGCAG AACCAGCAGT GGGAAAGGGA CTGGGAGGTG GGGACAAGGA GAAGATGAAG
  TGGGGGAGGA GGGGGAAAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51118302	NES13854518	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37065539					SNP	G	G	G	G	G	G	T	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51118302	NES13854518	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:52520837 () rs orientation: forward

Symbol	Name	Function Class
Rr611420	regulatory region 611420	within coordinates
Rr611421	regulatory region 611421	307 bp proximal
Sod3	superoxide dismutase 3, extracellular	309 bp upstream
Tssr46168	transcription start site region 46168	417 bp upstream
Tssr46169	transcription start site region 46169	430 bp upstream
Tssr46170	transcription start site region 46170	461 bp upstream