rs37068822 SNP Detail

Summary

• ID
  rs37068822
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60235096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCATGTT TAGCAGTACA
  CAGGAAAGCT TTGGCCCACT CCGGGGTTGG GAGACAAGGC TCTATTTTGT GGTGAAGGCC
  ATAGATAGGT CTTAGACGTG CTTGTGCTTA CCATCATGGT GTATTCTGAG ACCGTAGAGT
  CCCTGATGGG CAAGCCACAC AATATTTAGG CTCCTAAGCA GGCAGCTGGT TGCCAGGGGA
  R
  TTTGGTATTC TGGGAAGAAG GGAGGGTTGT GGGTGAGGGT TGGAGTGAAC CTGGTACCCC
  ACTCACACTG TGAATGCCCT GTCTCTCAGT CTGAGACATG TTGAAATTTG AGAAATGGCA
  CACACTTCTG CAGCCAGATA AGGGACATTT TCCGAGAATC CAGGAAAAAC AGGGCCTAGG
  GACCCTGCAG AGGAGGTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss50866224	NES14170256	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G		A	G	G		A
ss323325370	CHEV_10_59862065	CHEVERUD	SCREENING_POP	f	SNP											A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs37068822					SNP	G	G	G	G	G	G	A	G	G	G	A	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50866224	NES14170256	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60235096 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Gm17455	predicted gene, 17455	547 bp upstream
Rr215449	regulatory region 215449	896 bp distal
Rr223077	regulatory region 223077	466 bp distal
Rr228097	regulatory region 228097	within coordinates
Tssr93633	transcription start site region 93633	432 bp upstream
Tssr93634	transcription start site region 93634	485 bp upstream
Tssr93635	transcription start site region 93635	532 bp upstream
Tssr93636	transcription start site region 93636	1436 bp upstream