rs3706981 SNP Detail

Summary

• ID
  rs3706981
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171576438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTG GTCACATCTT TGTAAAAACT
  Y
  ACTTCATGGT AAGTCCCTTA AAGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5083222	WI_WGS_1_173031844	WI	MOUSE	f	SNP			T	C
ss45053972	mCV24403626	ABI	CRAMUS_MOUSE	f	SNP	T	T		C	T
ss120002645	PARCsnp_1.15400	PARC_SEQ	INBRED	f	SNP				C	T
ss120005021	PARCsnp_1.04779	PARC_SEQ	INBRED	f	SNP				C	T
ss146173626	ENSMUSSNP1806717	ENSEMBL	ENSEMBL_Sanger	f	SNP		T			T
ss320120647	CHEV_1_173679001	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3706981					SNP	T	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171576438 () rs orientation: forward

Symbol	Name	Function Class
Rr423388	regulatory region 423388	within coordinates