AGGCCTTCTT GAGGTTGCCA GCCGCTTCGT CCAGGTAGGC GATGCTGTTC TTACAGTGGT AGGTGATGTT CTGGGAGCCC TCAGTGGACA GTAGACGGAG R AAAGTCATCT GGACGTTAGC GGTGTTGGGA GCCAGGTTGC CATCGCCATA GCTGAACTGT GGGGCAGAGG GGCGAGGGTT GTGAGACCAG GGGCCTAGCA R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss51763551 | NES14551336 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | G | G | G | G | G | G | G | A | G |
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs37075552 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | A | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss51763551 | NES14551336 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr15:97874709 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Col2a1 | collagen, type II, alpha 1 | Coding-Synonymous | ||||||
Intron | ||||||||
Noncoding-Transcript-Variant | ||||||||
Noncoding-Transcript-Variant | ||||||||
Rr509000 | regulatory region 509000 | within coordinates | ||||||
Tssr4707 | transcription start site region 4707 | 60 bp downstream | ||||||
Tssr132910 | transcription start site region 132910 | 1198 bp downstream | ||||||
Tssr136189 | transcription start site region 136189 | 1141 bp upstream | ||||||
Tssr136190 | transcription start site region 136190 | 1111 bp upstream | ||||||
Tssr136191 | transcription start site region 136191 | 907 bp upstream | ||||||
Tssr136192 | transcription start site region 136192 | 777 bp upstream | ||||||
Tssr136193 | transcription start site region 136193 | 760 bp upstream | ||||||
Tssr136194 | transcription start site region 136194 | 709 bp upstream | ||||||
Tssr136195 | transcription start site region 136195 | 686 bp upstream | ||||||
Tssr136196 | transcription start site region 136196 | 674 bp upstream | ||||||
Tssr136197 | transcription start site region 136197 | 656 bp upstream | ||||||
Tssr136198 | transcription start site region 136198 | 132 bp upstream | ||||||
Tssr136199 | transcription start site region 136199 | 93 bp upstream | ||||||
Tssr136200 | transcription start site region 136200 | 68 bp upstream | ||||||
Tssr136201 | transcription start site region 136201 | 12 bp upstream | ||||||
Tssr136202 | transcription start site region 136202 | 24 bp downstream | ||||||
Tssr136203 | transcription start site region 136203 | 449 bp downstream | ||||||
Tssr136204 | transcription start site region 136204 | 542 bp downstream | ||||||
Tssr136205 | transcription start site region 136205 | 1005 bp downstream | ||||||
Tssr136206 | transcription start site region 136206 | 1044 bp downstream | ||||||
Tssr136207 | transcription start site region 136207 | 1074 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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