rs37076194 SNP Detail

Summary

• ID
  rs37076194
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45825752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTATCTAA AATTTGGAAT
  CCAAGAACCT TATGGTGTAC ATTGTTTAGT TTTTGTTATT TTCTTAAGCT TATCAAAGAC
  ACAAATTTAT TCCTATATGT ATTTGTTCTT TCTCACAGAA TAAAAGTAAG AGTCAAGAAC
  TATGTAAGCT TTACAATGAG ATTATGCTGT ATGAATTTAA TGTAGCATAT TGGAAAAGTT
  S
  CACGATTACG ATGTCCAAAG CATACCAAAT CCATACAACA TTCGTTACTA AAATCCACAA
  CTCTAATCAA AACATAGTCA TACTGACCTC TGGTGGTCAG ATTCCTTATA TTTCACTGAT
  ACTGAAATAA CTAGATAAAA TACTCATGAG ACATTTTTTT TTTAATCAAC AAAACAATAA
  AGGCAGCAAG CACCTAAAAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51715829	NES14748602	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37076194					SNP	C	C	C	C	C	C	G	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51715829	NES14748602	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45825752 () rs orientation: forward

Symbol	Name	Function Class
1600023N17Rik	RIKEN cDNA 1600023N17 gene	292 bp downstream
Cpgi15841	CpG island 15841	835 bp proximal
Ncapg	non-SMC condensin I complex, subunit G	1509 bp upstream
Rr367838	regulatory region 367838	1172 bp upstream
Rr611093	regulatory region 611093	within coordinates
Rr611094	regulatory region 611094	80 bp proximal
Rr611095	regulatory region 611095	485 bp proximal
Rr611096	regulatory region 611096	1019 bp proximal
Rr611097	regulatory region 611097	1260 bp proximal
Tssr46141	transcription start site region 46141	1474 bp upstream
Tssr46142	transcription start site region 46142	1497 bp upstream
Tssr46143	transcription start site region 46143	1594 bp upstream
Tssr46144	transcription start site region 46144	1823 bp upstream