rs37078836 SNP Detail

Summary

• ID
  rs37078836
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:70440893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCCTTTTT TCCTCGCTGT
  TCACTCACCC TTGTCCCCCG GGAGGATGAG CCTATATGGG TTCGGAGGTG ACCAGGGATG
  AAATCATCCA GGCTGAGCCC AGCAGGGAGG CCTTGCATGC TTGGGTCAAG GTTGGAGGAC
  GCAGGATGTG CCAGCTGCTC CTTCGTGTGT ACTCTGCAGA GAAGGAGGAA GGAAGGGAAA
  R
  CCCTGCTCGG CTGGACTGCC TGGGACCTCT TGACTCAACC CACTGGTGGG GGAGGAAGGT
  AGGTTTGTGG GAGGGAATTA TGGCCAGCTG GGTGGGAGCT CAAGGACCCA GGAAACAGGC
  AGCTCTGGGC ACCCGCCTGC AGGCTGCCAG TGCCGACTCC CAGAGGCACA ATGGATTGCT
  TGTTAGGCCT GGGGCACGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51532222	NES14630563	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G	G	A	G	G	A	A	G	G	G
ss139681783	ENSMUSSNP5000721	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G						G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37078836					SNP	A	G	G	G	G	G	A	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51532222	NES14630563	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70440893 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm26908	predicted gene, 26908			within coordinates
Gm49417	predicted gene, 49417			1880 bp upstream
Rr494880	regulatory region 494880			665 bp proximal
Rr494881	regulatory region 494881			1169 bp proximal
Rr494882	regulatory region 494882			1793 bp proximal
Rr494883	regulatory region 494883			1891 bp proximal
Sorbs3	sorbin and SH3 domain containing 3			Intron
				Noncoding-Transcript-Variant
Tssr126403	transcription start site region 126403			37 bp downstream
Tssr126404	transcription start site region 126404			1727 bp upstream
Tssr126405	transcription start site region 126405			1781 bp upstream
Tssr126406	transcription start site region 126406			1800 bp upstream
Tssr129550	transcription start site region 129550			within coordinates
Tssr129551	transcription start site region 129551			11 bp downstream
Tssr129552	transcription start site region 129552			23 bp downstream