rs37080546 SNP Detail

Summary

• ID
  rs37080546
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44842574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAATACCA AAGCATAATA
  ATCCCATAAT ATGGCAAAGA TGTTTCCCCA TAAAGGGGCA AGTGAAGATG TAGGGTGGTA
  ATGATACATT CTAGAAACAA GATAACCATG TCACAATTTA CTAATATTAG CCAGGAAATG
  ATGGGCCAAT GCTACAAGTT AACAACTGAC AGTGTAATTG AGTAGCTCAG TGGTGATGTA
  M
  TGGATACAAT GTCATGATGG AAGATACAGT ACTAATGTCT CGTGACATAA GATAGTCTCA
  AAAACAGTGG AAGGAAGGGA TTGGATATGT TAGACCAAGG CCCCAGAATC CTAGAAGAAG
  AAAGCATTCA TAACTTTGGA AAGATGCTTC CTCCAGGTAC AACAGAGGCT AAAAGTGGTT
  GCTGGAAGGA TTCTCCATTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50797987	NES13526760	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	C	A	A	C	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37080546					SNP	A	A	A	A	C	A	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50797987	NES13526760	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44842574 () rs orientation: forward

Symbol	Name	Function Class
D19Mit27	DNA segment, Chr 19, Massachusetts Institute of Technology 27	964 bp distal
Rr394467	regulatory region 394467	within coordinates