rs37080850 SNP Detail

Summary

• ID
  rs37080850
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143946842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGCATGA GGCAAGATGT
  TCAGACAATT AACCATTAGA ATTCCATTTC CATCTCAGAT ATACTTTACC TGTGGCGCAT
  CCTGGGAGTT GCTTAGGTGA AGCTGGCAAC ACAACTAGAC TCTAGTCACA GCCTCGGTTT
  TGGAGTCTAC TGGCCAGGGT TTCATGAACT CCGATTAATT AATAAGTGGG ACATGGAGAC
  K
  TAAAACTTGT CAGCAGAGGG GCAGGGGACA AGCCAGGATT TGGAGACTAG ACAGGAGCTT
  CCCACAGCAG TGTCCTTGCT GAATGCTAAC CTTCCGCACT TTCCTCATGA AGAATGGGGA
  AACCTTTTCA ATAAAAACAC AGGAAGGGAA GGGTCATTGT TAAAACCACC AATGAGATGG
  TCCATGTGCC ACACAGGTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss51654956	NES14643020	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs37080850					SNP	G	G	G	G	G	G	T	G	G	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51654956	NES14643020	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143946842 () rs orientation: forward

Symbol	Name	Function Class
Rr398097	regulatory region 398097	1025 bp upstream
Rr586608	regulatory region 586608	873 bp proximal
Rr586609	regulatory region 586609	880 bp proximal
Rr586610	regulatory region 586610	1141 bp proximal