rs3708167 SNP Detail

Summary

• ID
  rs3708167
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78354194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACTATCC AGGAACTCAC
  CGTGTAGTTC ATGCTGACCT CAGACTCAGA GCTCTGCCTG AGTTGTGCAC CATCGTGCCC
  AGCTAAGCAA ATATATTGTT AAGGGGACTG GACAGATGAT TGGCAGGTAA AAATATCTGC
  TGTCAAATCT GATGATGTGG GTTCAATTCC CAGAACCCAC AGGATGAGGA GAACTGACTC
  Y
  CTCAAGTAGA TCTCCATATG TGCACTGTAG TATGAGTAAG CCCATACACA TACTCACATG
  CAAATGAATA CATGCAATTA AAAATTTAAA TATATATAGT TAAATGGAGG GGAATAAAGT
  GAAAGATAGT ATAATCACAG AATTTATATA CAAAATACTA GCGTTCCTGT GCCGTGTGAG
  TTTTCCCCCT CCTGTGAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5084411	WI_WGS_9_79210771	WI	MOUSE	f	SNP	C							T
ss46388171	mCV25043860	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					T		T
ss61427229	NES16810938	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		C	T	T	T		C	T	C	C		C
ss136667720	ENSMUSSNP3722117	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
ss323016286	CHEV_9_78294719	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3708167					SNP	C	C	T	T	T	C	T	T	C	T	T	T	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61427229	NES16810938	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78354194 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22068	CpG island 22068	1068 bp proximal
Gm17324	predicted gene, 17324	953 bp downstream
Mto1	mitochondrial tRNA translation optimization 1	1178 bp upstream
Rr401544	regulatory region 401544	1125 bp upstream
Rr683554	regulatory region 683554	806 bp proximal
Rr683555	regulatory region 683555	1864 bp proximal
Tssr86287	transcription start site region 86287	1280 bp upstream