rs37082966 SNP Detail

Summary

• ID
  rs37082966
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:128813017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGATACTG CAGCAAGTGG
  CGCGAACCTG CCTCATCTTC GCTTGGCACG AACCAGTCAC CTACTCCAAG AATTTGGAAA
  AATGAAAATT TGGAAAACGA CTTATCCTTT CGGCTTTCCT TCAAACCTCA TACGTCTCAG
  GGGTGGAATG GCTTGCGACT TTTAAGGCCA GCCAGAGATG GAGTCCCAAC TCTTTCTCTG
  Y
  AAGACGCTGG AAGGGCCACC ATTGAGTGAG GAGGATTCGC ACCTGGAGCA AGGACCAAGA
  AGAATGGGGC TTGGGTGTGG TCTCGAGACC CCGCCCCACA CAAAACCGCC ACCCACGTGG
  CAGCCAATCA GGGCCCAGCA CGTGTCCACC TCGCCGTTAA CCCAGAGGTC TGTGGAGGTA
  GCTCGGCCGA GGCCTGGGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51843721	NES14705141	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37082966					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51843721	NES14705141	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:128813017 () rs orientation: forward

Symbol	Name	Function Class
4930553I04Rik	RIKEN cDNA 4930553I04 gene	within coordinates
Cpgi16665	CpG island 16665	within coordinates
Gm71554	predicted gene, 71554	within coordinates
Piwil1	piwi-like RNA-mediated gene silencing 1	118 bp upstream
Tssr1644	transcription start site region 1644	207 bp upstream
Tssr48983	transcription start site region 48983	133 bp upstream
Tssr48984	transcription start site region 48984	172 bp upstream
Tssr48985	transcription start site region 48985	215 bp upstream
Tssr48986	transcription start site region 48986	289 bp upstream
Tssr53471	transcription start site region 53471	58 bp downstream