rs37086339 SNP Detail

Summary

• ID
  rs37086339
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44838312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCGCTCCCC CCCTCTCCAT GATCCATGGC TCATTCATCC
  CCATTCCCTC CTGAACACCA CTCACTCCTC TGGGCCTTCC TGGCTCTGAC TCAGCTGCTC
  Y
  TCCAGGTTTG AGATCTCTTG CCTTAGTTCC TGTAAGAAGC AGAGCATGGG CCCCCGTGGA
  GCCCACACAC TCCTCTTGCC GACACATACT GCCAGTTACC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51480577	NES13972249	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37086339					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51480577	NES13972249	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44838312 () rs orientation: forward

Symbol	Name	Function Class
Gm31097	predicted gene, 31097	10 bp upstream
Kash5	KASH domain containing 5	within coordinates
Rr380751	regulatory region 380751	1879 bp downstream
Tssr72334	transcription start site region 72334	175 bp upstream
Tssr72335	transcription start site region 72335	666 bp downstream
Tssr72336	transcription start site region 72336	759 bp downstream
Tssr72337	transcription start site region 72337	783 bp downstream
Tssr72338	transcription start site region 72338	906 bp downstream