rs3708770 SNP Detail

Summary

• ID
  rs3708770
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152101388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTCATTC TTGGCGGGTA
  GTGCTGTTTA AAGGTACGGA AAATAAAAGC GGTGGAGAAG GTGTACTCTG GTGGGACTGC
  CGACGAGTCG CGGTGGAGCT GGGGAAGAGT CCTGCCCTAG GGAGGGAGGT GAGCAAAGGC
  TGGAGAGGTG GGCGCCTGCG TACTGAGCGG GCGGCGGCTG GCGCGGCAGT CCGGGGCGTC
  S
  TGCGGAAAGC GCCGCGGGGC CAGGCAAGGT CGGGACGCGG GCGGGGAGCC TCTCCGGGAA
  GGTAGAGCGG ATCACAGCAC GCAGCGGGCT GGGCCGGTGA ATCCTCCCGC CCGCCGGCCG
  GCCGGGTCGG GATCGCTGCA GCGGCCGCGG CCACCAGTAG GTGGCGCGCC GAGCGCCCGG
  CTCCCAGCGT CTCAGAGCCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J
ss5085015	WI_WGS_3_152978127	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J
rs3708770					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152101388 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13949	CpG island 13949	989 bp distal
Cpgi13950	CpG island 13950	within coordinates
Gm43857	predicted gene 43857	1511 bp upstream
Gm66519	predicted gene, 66519	1074 bp upstream
Rr587541	regulatory region 587541	1917 bp distal
Rr587542	regulatory region 587542	268 bp distal
Rr587543	regulatory region 587543	within coordinates
Rr587544	regulatory region 587544	150 bp proximal
Rr587545	regulatory region 587545	210 bp proximal
Rr587546	regulatory region 587546	299 bp proximal
Rr587547	regulatory region 587547	443 bp proximal
Rr587548	regulatory region 587548	489 bp proximal
Rr587549	regulatory region 587549	524 bp proximal
Rr587550	regulatory region 587550	946 bp proximal
Rr587551	regulatory region 587551	954 bp proximal
Rr587552	regulatory region 587552	1946 bp proximal
Tssr32410	transcription start site region 32410	262 bp downstream
Tssr32411	transcription start site region 32411	240 bp upstream
Tssr32412	transcription start site region 32412	310 bp upstream
Tssr32413	transcription start site region 32413	611 bp upstream
Tssr32414	transcription start site region 32414	913 bp upstream
Zzz3	zinc finger, ZZ domain containing 3	Intron