rs37088663 SNP Detail

Summary

• ID
  rs37088663
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16049821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAAGGTGGC ATCCACCACC TCGCCCAGTT GCAAGGAGGA
  GGAGGGCACA GGAGGCCTGG GCTAGTTCTG GGCATGTACT CTAATAGGGT CATTAGCCTG
  M
  CATCTTCCAA ATGGATTACA TTCTTCACAA CCAAGAACAT GAGCCCGGTG GATCTGCTTG
  GCCATAACCA GTGGAAGGAC CAAATAAAAG CTTGCTCTCT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss51880507	NES14894324	PERLEGEN	MM_PANEL2	f	SNP	A	C	C	A	A	A	A	A	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs37088663					SNP	A	C	C	A	A	A	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51880507	NES14894324	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16049821 () rs orientation: forward

Symbol	Name	Function Class
Bbc3	BCL2 binding component 3	within coordinates
Cpgi18373	CpG island 18373	1384 bp distal
Rr167075	regulatory region 167075	1020 bp distal
Rr380460	regulatory region 380460	within coordinates
Tssr64602	transcription start site region 64602	290 bp downstream
Tssr70736	transcription start site region 70736	1909 bp upstream
Tssr70737	transcription start site region 70737	1847 bp upstream
Tssr70738	transcription start site region 70738	1833 bp upstream