rs37090809 SNP Detail

Summary

• ID
  rs37090809
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:52215396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGGAACA CTTTCAGGTT
  GACAATATAT GTAATCCAAA TGCCTTGCCA TCAAAGATAA AAAATGTATG TGTGGAGTGT
  CATAAGCAGA CATCTGTTCT TTATTAATGA GCCACCTGAC TATCAGCAGG AATGCAGAGC
  ACAGTTTTAT AGCCCTGTAC TGTTAAGCAG GCTGAGAGGC CGCCTGCTCA TAAGCTTTCT
  R
  GCGATTTACT CAACAAAGCT ATTCAAGTGT TATTATCAAA AGAAAGTACC CCCTTTTCTC
  CAGGAAAAGA AAAAGGTTAA TATATTTCTA CACCCAACCA TGTCTACAAA TCTGCCCTGC
  TCTATTTTAT TGGGGGTACT TTCCCCAATC AAGGCTAATC TTCCACTTAC CTGAGTGCCC
  CGGCTCTTTC CAGGAACCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50950452	NES13932100	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37090809					SNP	A	A	A	A	G	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50950452	NES13932100	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:52215396 () rs orientation: forward

Symbol	Name	Function Class
D1Ncl2	DNA segment, Chr 1, Nicolas C. Levy 2	151 bp distal
Gls	glutaminase	within coordinates
Rr22237	regulatory region 22237	796 bp distal
Rr33831	regulatory region 33831	within coordinates
Tssr6673	transcription start site region 6673	1139 bp upstream