rs37091041 SNP Detail

Summary

• ID
  rs37091041
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:47447850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGCTCTG TGTGGCGCTC
  ATCTCCTAGC TAGGAGCCTC CTTGTCCTTA CCTGGAGCCT CCCCTTCTCT ACCAGCCCAC
  CAGCCCACCT TCTTTCTCTC CTCAGCTTAT CAGAAATCTA ACAATCTCAC ACTAGGCCCC
  AACACTAGGC CAGCACCACC TCCAGGTCTG GACAGCTGTC CTCTGTGCTC TGGTGTCATG
  W
  ACACTGGGTG CTTTCCACGG GGCAGGCGGC CCAGTGTCCG TCCCATCAGA CCCTCAACAG
  CTGGGCCTTC TTCTCTGCCT AGTTACAGGT GAGGATGCTG AGCCTGGAGT CAAGTCAGGG
  ATCCAAGCTT GTACTGTTTG GGAGTGCCAG AGGCGGTATT TGAACCCCAA TCTGCCTGCT
  CTCACTTCTT CCATGATTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50859984	NES13511654	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37091041					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50859984	NES13511654	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47447850 () rs orientation: forward

Symbol	Name	Function Class
Gm52384	predicted gene, 52384	within coordinates
Rr549060	regulatory region 549060	175 bp distal
Rr549061	regulatory region 549061	778 bp proximal
Rr549062	regulatory region 549062	1422 bp proximal
Sh3pxd2a	SH3 and PX domains 2A	within coordinates
Tssr159729	transcription start site region 159729	1197 bp downstream
Tssr159730	transcription start site region 159730	1347 bp downstream