rs3709182 SNP Detail

Summary

• ID
  rs3709182
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71149106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGT CTCGAAAAGC AACCAAAAAT
  R
  TTCAGGTCTT ACTATTTCTT TACAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5085427	WI_WGS_8_70100682	WI	MOUSE	f	SNP	A			G
ss46220026	mCV22788457	ABI	CRAMUS_MOUSE	f	SNP		A	G		A
ss145129749	ENSMUSSNP6725568	ENSEMBL	ENSEMBL_Sanger	f	SNP			G		A
ss322701099	CHEV_8_73220355	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3709182					SNP	A	A	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71149106 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20485	CpG island 20485	776 bp distal
Cpgi20486	CpG island 20486	83 bp proximal
Gm64347	predicted gene, 64347	within coordinates
Rr368548	regulatory region 368548	727 bp downstream
Rr368549	regulatory region 368549	1840 bp upstream
Rr400910	regulatory region 400910	876 bp downstream
Rr664888	regulatory region 664888	within coordinates
Rr664889	regulatory region 664889	1547 bp proximal
Tssr81647	transcription start site region 81647	1861 bp downstream
Tssr81648	transcription start site region 81648	1878 bp downstream