rs37094424 SNP Detail

Summary

• ID
  rs37094424
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:49025626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTTGCTGGC CACGTTTCTG
  CGCAGATCAT TCTCTATGCA TTTACAAACA TCCTATGTGG TCTGTCATTT TGGATGTTAT
  GTAAATGGGT TCACATCATG TGCTGTGTTC TTTGCCCCTC TTTGCTAAAT AACCACAGAA
  AGCTTTCAGT TACTGTGCAT GGAAATCTCT CACACCTGAC CGGGTGTCGC ACAGTGTCAC
  M
  GGGTGTACTG ATAAACACCC ACAAGCTTGT TGGTGAGCAA CGAAGGGATC GCAAGTCCAG
  TTACAAATGT AGCAGTACTG GGCTAGTCCA GACATACAGC TTCATCTCAC TCTAAACCCC
  CTCCCTCCCC GCTCTCCTCC CTCCTCCTAC ATTTCCCTTT CCCCAGCCTC TTATGTAGCC
  CAGGCTAGCT TCAAACTCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51658452	NES14824142	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37094424					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51658452	NES14824142	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:49025626 () rs orientation: forward

Symbol	Name	Function Class
Gm56981	predicted gene, 56981	within coordinates
Gpnmb	glycoprotein (transmembrane) nmb	Intron
Tssr56341	transcription start site region 56341	1971 bp downstream
Tssr56342	transcription start site region 56342	1939 bp downstream
Tssr56343	transcription start site region 56343	1393 bp downstream
Tssr56344	transcription start site region 56344	1369 bp downstream
Tssr56345	transcription start site region 56345	1350 bp downstream
Tssr56346	transcription start site region 56346	1297 bp downstream
Tssr56347	transcription start site region 56347	1279 bp downstream
Tssr56348	transcription start site region 56348	1256 bp downstream
Tssr56349	transcription start site region 56349	935 bp downstream
Tssr56350	transcription start site region 56350	906 bp downstream
Tssr56351	transcription start site region 56351	879 bp downstream
Tssr56352	transcription start site region 56352	860 bp downstream
Tssr56353	transcription start site region 56353	792 bp downstream
Tssr56354	transcription start site region 56354	778 bp downstream
Tssr56355	transcription start site region 56355	754 bp downstream
Tssr56356	transcription start site region 56356	736 bp downstream
Tssr56357	transcription start site region 56357	724 bp downstream
Tssr56358	transcription start site region 56358	706 bp downstream
Tssr56359	transcription start site region 56359	675 bp downstream
Tssr56360	transcription start site region 56360	628 bp downstream
Tssr56361	transcription start site region 56361	1190 bp upstream
Tssr56362	transcription start site region 56362	1418 bp upstream
Tssr56363	transcription start site region 56363	1705 bp upstream
Tssr60849	transcription start site region 60849	1330 bp upstream
Tssr60850	transcription start site region 60850	1277 bp upstream
Tssr60851	transcription start site region 60851	815 bp upstream
Tssr60852	transcription start site region 60852	786 bp upstream
Tssr60853	transcription start site region 60853	774 bp upstream
Tssr60854	transcription start site region 60854	757 bp upstream
Tssr60855	transcription start site region 60855	712 bp upstream
Tssr60856	transcription start site region 60856	685 bp upstream
Tssr60857	transcription start site region 60857	584 bp upstream
Tssr60858	transcription start site region 60858	1747 bp downstream
Tssr60859	transcription start site region 60859	1789 bp downstream
Tssr60860	transcription start site region 60860	1803 bp downstream
Tssr60861	transcription start site region 60861	1821 bp downstream