rs37094543 SNP Detail

Summary

• ID
  rs37094543
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37466428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGCACATC TTTAGTCCCC CCCCCCCTCC ACCAAATGGC
  AGGATGTCCT AGGAACTAAG GTCCTTGCCT AAATGACAAA CACATCTGTA GCCTCTGCCT
  S
  TGCCAACTTC CCCTGTGCTT TTACTCCAGG ACCCAGAGGG GAGACGGAAG GGGGAAACAG
  AGGGGCAGAG AGGATATCAG ATCTGGACTC TGCCTTTCCC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50673620	NES14003016	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37094543					SNP	G	G	G	G	G	C	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50673620	NES14003016	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37466428 () rs orientation: forward

Symbol	Name	Function Class
Gm46107	predicted gene, 46107	312 bp upstream
Rr676717	regulatory region 676717	1783 bp distal
Rr676718	regulatory region 676718	350 bp distal
Rr676719	regulatory region 676719	25 bp proximal
Rr676720	regulatory region 676720	288 bp proximal
Tssr84410	transcription start site region 84410	482 bp upstream
Tssr84411	transcription start site region 84411	505 bp upstream
Tssr84412	transcription start site region 84412	513 bp upstream
Tssr84413	transcription start site region 84413	539 bp upstream
Tssr84414	transcription start site region 84414	561 bp upstream
Tssr88861	transcription start site region 88861	1735 bp upstream