rs3709584 SNP Detail

Summary

• ID
  rs3709584
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171075063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCGTCCC TCCCACGGCT
  TCTCTGGGCG TGAGAGATTT ACTGCTCTCT CCTGAGGCAA CTTCGCGCAG AATCCAGCAC
  TTCCCGCTAG GTCCACGCTC TGCACTCGAA CTTTCCTTAG AAACTGCGCT CCCTCTAGGT
  CCCCTACGCA CTCTCTGTAT GGGCGTTCCT TGACTATCTT ACCATCTTGG TCAGTCTCCT
  S
  CGGTAGTCCT GCTTTCCGAC AGAAGCCCCC AAGTTTTGAT GACTATCTCT TTACTACGAA
  ATCCAAAAGT GTTCATTTCC AGAGGTCCGG AAACGGGCTT GTGTGAAGGG ACTCAAGTGC
  AGATGGGCAA GTCACAACAA ACGGGAATTC ACAGCCAAGG CCACGAGCGG TGGTGGAGCA
  AGGGGGCACT TGGTGCAAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5085830	WI_WGS_1_172526055	WI	MOUSE	f	SNP	C						G
ss49750552	NES13032444	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	C	G	C		G	G	G	G		G	G	G	G		G
ss320117549	CHEV_1_173177625	CHEVERUD	SCREENING_POP	f	SNP												C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3709584					SNP	C	G	G	C	G	C	G	G	G	G	G	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49750552	NES13032444	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171075063 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1016	CpG island 1016	within coordinates
Gm71631	predicted gene, 71631	within coordinates
Ndufs2	NADH:ubiquinone oxidoreductase core subunit S2	within coordinates
Rr372446	regulatory region 372446	within coordinates
Rr423259	regulatory region 423259	within coordinates
Rr423260	regulatory region 423260	334 bp distal
Rr423261	regulatory region 423261	172 bp proximal
Rr423262	regulatory region 423262	1119 bp proximal
Tssr10000	transcription start site region 10000	117 bp downstream
Tssr15023	transcription start site region 15023	373 bp upstream