rs37096219 SNP Detail

Summary

• ID
  rs37096219
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:130132249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAAAGAA AGAAAATCTT
  GAAGGCGTTG TGGTAATCGC TAAGAAATTG GCAAGTGGTT TGGATAGACT AATGGATACT
  AAATAGGTGT CTGAGCAGTG GTCTGTGCAA GACGGTCAAA AAAGACCACG AGGGTAGTAC
  TGATTGGTTA AGAATGGGGA AGGGGGGGGC GTATTTTAGA ATTAAAAATC CTGCAAAATA
  Y
  GGCAAAAATG TTGGTACAAA AATCCTAAGA TTTGTGAAAT AGTTTTTAGT ATATGTTTTT
  AAATGGCCCA TGAGCTGACC AATGATCAGT TAACATAGAT CCAGTCTCTT GAAGTTTAGG
  CACATAAAAG GTTTTGGGAC TACTCCCAAT ATATATGCAT TATCATATAA AGCACCAGAA
  TCAAACAGTG GGAGGGAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50471187	NES14117733	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
ss61062489	NES16062321	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37096219					SNP	T	T	T	T	T	T	?	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50471187	NES14117733	PERLEGEN	MM_PANEL	f	SNP	C/T
ss61062489	NES16062321	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:130132249 () rs orientation: forward

Symbol	Name	Function Class
Gm4275	predicted gene 4275	1018 bp downstream
Gm57247	predicted gene, 57247	792 bp upstream
Gm72045	predicted gene, 72045	1016 bp downstream
Rr153982	regulatory region 153982	249 bp distal
Rr153983	regulatory region 153983	152 bp proximal
Rr153984	regulatory region 153984	752 bp proximal
Rr169359	regulatory region 169359	1352 bp proximal
Rr381489	regulatory region 381489	within coordinates
Tssr69470	transcription start site region 69470	789 bp upstream