rs37096263 SNP Detail

Summary

• ID
  rs37096263
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:135397672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACGGGAG ACCGGCCTGG
  TCCCCACGCG CTGGGCACAA AAGTCAATCT CATCTGCTTG TTCCCTCCTC TGGGGGTCTC
  GGCTACACTC AGATCGCTCC ATAGAGCGGA CAGGAATTTC GAGATCGTAG CTGAGGTTCT
  CTCCAGAGAA CCATGAATTT ATATTGGGTC TGGATGAAGT CTTCAATCCG CTCGATTATT
  Y
  CAGCCACAGC GCATTGTCCG GCCTGTGTGA TCATCGCTGT GGATGGAATT AGAGCGACAG
  TGAGACCCGC AGTGTTGGTT CACAGCTCAT AAATCCTTAT CCGGCTCAAG GGAGGTTATT
  TTTCTGGAGA GGCCTCCCAC TGATGACCGT TTGCGAGCAT TTGAGCGTCT TTATTCTTTG
  GGCAAAGTGC CTCCATGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51649049	NES14653459	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37096263					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51649049	NES14653459	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135397672 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13858	CpG island 13858	within coordinates
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	364 bp upstream
Rr398044	regulatory region 398044	1473 bp downstream
Rr585767	regulatory region 585767	within coordinates
Rr585768	regulatory region 585768	1119 bp proximal
Tssr35825	transcription start site region 35825	655 bp upstream
Tssr35826	transcription start site region 35826	640 bp upstream
Tssr35827	transcription start site region 35827	598 bp upstream
Tssr35828	transcription start site region 35828	541 bp upstream
Tssr35829	transcription start site region 35829	504 bp upstream
Tssr35830	transcription start site region 35830	494 bp upstream
Tssr35831	transcription start site region 35831	432 bp upstream
Tssr35832	transcription start site region 35832	400 bp upstream
Tssr35833	transcription start site region 35833	347 bp upstream
Tssr35834	transcription start site region 35834	28 bp downstream