rs3709663 SNP Detail

Summary

• ID
  rs3709663
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:66078479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCGG GGCCCAGGTG AAACCACAAG
  Y
  CCCTGGTGCA CCAGATCCTA ATCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5085909	WI_WGS_17_64889285	WI	MOUSE	f	SNP		C	T
ss39515359	mCV24592626	ABI	CRAMUS_MOUSE	f	SNP	C		T	C
ss145840842	ENSMUSSNP6620587	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			C
ss325428005	CHEV_17_66120824	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3709663					SNP	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:66078479 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9418	CpG island 9418	491 bp proximal
Rab31	RAB31, member RAS oncogene family	within coordinates
Rr529807	regulatory region 529807	within coordinates
Rr529808	regulatory region 529808	1048 bp proximal
Rr529809	regulatory region 529809	1146 bp proximal
Tssr149074	transcription start site region 149074	1151 bp downstream
Tssr149075	transcription start site region 149075	1181 bp downstream
Tssr149076	transcription start site region 149076	1202 bp downstream