rs37099138 SNP Detail

Summary

• ID
  rs37099138
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113281453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CCATTCCGAG ATTATGTTGA CCGATCGGGG AACCAGGTGC TGAGCATGGC
  M
  CGACTGGCCA AGGATGTACT AGCTGAGATT CCTGAACAGT TGCTCTCCTA           
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51842544	NES14762363	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37099138					SNP	C	C	C	C	C	A	C	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51842544	NES14762363	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113281453 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17838	CpG island 17838	1824 bp proximal
Cpne9	copine family member IX	within coordinates
Gm15492	predicted gene 15492	within coordinates
Gm43935	predicted gene, 43935	1133 bp downstream
Gm67816	predicted gene, 67816	1129 bp downstream
Rr399829	regulatory region 399829	1880 bp upstream
Rr636481	regulatory region 636481	1902 bp distal
Rr636483	regulatory region 636483	1043 bp proximal