rs37099237 SNP Detail

Summary

• ID
  rs37099237
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:49024229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAGCAGCT GTGAGCAGTT
  GTTACCTGTA TGCAAGCAGA AAGTTGCTTC ATCGGGTTTT GCATCAAGGC CGGCACCAGC
  TCCCTTTCAG GAGCGTCCAG CCTGTTCTCT TCGCAGAGCA ACCTTTAACC TTTCAGAAAC
  AACTCTGCCT AAAGATCATG TGATGTTACC AGTAACTCAA AATGTCCATC TTTTCACAGG
  Y
  CAGTATTTCC AAAAACTGGG TCGGTGTTCA GCACGGGTTT CTATAAACAC AGTCAACTTG
  ACAGCTGGCC CTCAGGTCAT GGAAGTGACT GTCTTTCGAA GATACGGCCG GGCATACATT
  CCCATCTCGA AGGTGAAAGA TGTGTATGTG ATAACAGGTG CGTGGCGTGA ACTCCACAGC
  AGCGGAGGAG GACGGGGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51658467	NES14824251	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37099237					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51658467	NES14824251	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:49024229 () rs orientation: forward

Symbol	Name	Function Class
D6Dcr8	DNA Segment, Chr 6, Derry C. Roopenian 8	845 bp distal
D6Mit142	DNA segment, Chr 6, Massachusetts Institute of Technology 142	857 bp distal
Gm56981	predicted gene, 56981	within coordinates
Gpnmb	glycoprotein (transmembrane) nmb	within coordinates
Tssr56319	transcription start site region 56319	1978 bp downstream
Tssr56320	transcription start site region 56320	1938 bp downstream
Tssr56321	transcription start site region 56321	1924 bp downstream
Tssr56322	transcription start site region 56322	1906 bp downstream
Tssr56323	transcription start site region 56323	1870 bp downstream
Tssr56324	transcription start site region 56324	1840 bp downstream
Tssr56325	transcription start site region 56325	1684 bp downstream
Tssr56326	transcription start site region 56326	1669 bp downstream
Tssr56327	transcription start site region 56327	1615 bp downstream
Tssr56328	transcription start site region 56328	1537 bp downstream
Tssr56329	transcription start site region 56329	1461 bp downstream
Tssr56330	transcription start site region 56330	1290 bp downstream
Tssr56331	transcription start site region 56331	1245 bp downstream
Tssr56332	transcription start site region 56332	1172 bp downstream
Tssr56333	transcription start site region 56333	1134 bp downstream
Tssr56334	transcription start site region 56334	1124 bp downstream
Tssr56335	transcription start site region 56335	1104 bp downstream
Tssr56336	transcription start site region 56336	1077 bp downstream
Tssr56337	transcription start site region 56337	1054 bp downstream
Tssr56338	transcription start site region 56338	1038 bp downstream
Tssr56339	transcription start site region 56339	1024 bp downstream
Tssr56340	transcription start site region 56340	834 bp downstream
Tssr56341	transcription start site region 56341	574 bp downstream
Tssr56342	transcription start site region 56342	542 bp downstream
Tssr56343	transcription start site region 56343	within coordinates
Tssr56344	transcription start site region 56344	11 bp upstream
Tssr56345	transcription start site region 56345	29 bp upstream
Tssr56346	transcription start site region 56346	66 bp upstream
Tssr56347	transcription start site region 56347	104 bp upstream
Tssr56348	transcription start site region 56348	130 bp upstream
Tssr56349	transcription start site region 56349	453 bp upstream
Tssr56350	transcription start site region 56350	480 bp upstream
Tssr56351	transcription start site region 56351	510 bp upstream
Tssr56352	transcription start site region 56352	523 bp upstream
Tssr56353	transcription start site region 56353	592 bp upstream
Tssr56354	transcription start site region 56354	607 bp upstream
Tssr56355	transcription start site region 56355	632 bp upstream
Tssr56356	transcription start site region 56356	650 bp upstream
Tssr56357	transcription start site region 56357	662 bp upstream
Tssr56358	transcription start site region 56358	680 bp upstream
Tssr56359	transcription start site region 56359	695 bp upstream
Tssr56360	transcription start site region 56360	732 bp upstream
Tssr60846	transcription start site region 60846	1903 bp upstream
Tssr60847	transcription start site region 60847	1820 bp upstream
Tssr60848	transcription start site region 60848	887 bp upstream
Tssr60849	transcription start site region 60849	34 bp downstream
Tssr60850	transcription start site region 60850	89 bp downstream
Tssr60851	transcription start site region 60851	559 bp downstream
Tssr60852	transcription start site region 60852	602 bp downstream
Tssr60853	transcription start site region 60853	612 bp downstream
Tssr60854	transcription start site region 60854	631 bp downstream
Tssr60855	transcription start site region 60855	664 bp downstream
Tssr60856	transcription start site region 60856	702 bp downstream
Tssr60857	transcription start site region 60857	731 bp downstream