rs37100313 SNP Detail

Summary

• ID
  rs37100313
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40369117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTG TCAGGCCTGG CAAAGACCTG
  R
  AAAGCTCTTC CGGCTTGGAC CAGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50677567	NES14010734	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	A	A	A	A		A	G	A	A		A
ss136330469	ENSMUSSNP6810047	ENSEMBL	ENSEMBL_Sanger	f	SNP							A
ss322916261	CHEV_9_40265406	CHEVERUD	SCREENING_POP	f	SNP										G					G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37100313					SNP	G	A	G	G	G	A	A	A	A	G	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50677567	NES14010734	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40369117 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21594	CpG island 21594	1454 bp distal
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676840	regulatory region 676840	1567 bp distal
Rr676841	regulatory region 676841	1965 bp distal
Rr676842	regulatory region 676842	860 bp proximal
Rr676843	regulatory region 676843	1231 bp proximal
Tssr84450	transcription start site region 84450	1911 bp downstream
Tssr84451	transcription start site region 84451	163 bp downstream
Tssr84452	transcription start site region 84452	108 bp downstream
Tssr84453	transcription start site region 84453	603 bp upstream
Tssr88940	transcription start site region 88940	1977 bp upstream
Tssr88941	transcription start site region 88941	1688 bp upstream
Tssr88942	transcription start site region 88942	1673 bp upstream
Tssr88943	transcription start site region 88943	1645 bp upstream
Tssr88944	transcription start site region 88944	1597 bp upstream
Tssr88945	transcription start site region 88945	1580 bp upstream
Tssr88946	transcription start site region 88946	1484 bp upstream
Tssr88947	transcription start site region 88947	1455 bp upstream
Tssr88948	transcription start site region 88948	1425 bp upstream
Tssr88949	transcription start site region 88949	336 bp upstream