rs37102160 SNP Detail

Summary

• ID
  rs37102160
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153725642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCACTGC GTTCTACCAG
  ACCTTGTAGA GGAAGGTGCA GTTCACCAGG GTCTGATGTT CAGTCAGACA AATCACAAAG
  TGGTCAGAGG AACAAACCAG GAACAGTCCT GAACTTCACA CAGAAAAACA AAACAAAACA
  AAACAAACAA AACAAAACAA AAAAACCAAC CCACCACCAC CAACAACAAA ACAGCCTGGA
  W
  TCAGAATAAG CATCATAGAA GTCAAGGACA AGAAAGGATG GGGAGATGGT TATTATGATG
  GCTGAATTAC GATGTGCTAA ATGTGATCTC AGGATAATAT TCTATACAAT AAAATAAAAG
  AAAGTCCCAA AGGGTGCAAA GCGGTACAGG CCAAGCAGGT GCTGCGACTG GAGGTGGGGA
  TTGGAGAGGC TTGTCAGGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51394642	NES14466017	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37102160					SNP	T	T	T	T	T	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51394642	NES14466017	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153725642 () rs orientation: forward

Symbol	Name	Function Class
Teddm2	transmembrane epididymal family member 2	within coordinates
Tssr14286	transcription start site region 14286	848 bp downstream
Tssr14287	transcription start site region 14287	1140 bp downstream
Tssr14288	transcription start site region 14288	1152 bp downstream
Tssr14289	transcription start site region 14289	1187 bp downstream
Tssr14290	transcription start site region 14290	1271 bp downstream
Tssr14291	transcription start site region 14291	1293 bp downstream