rs37104389 SNP Detail

Summary

• ID
  rs37104389
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:66118471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAAGTATC CTGGATTTTC
  CATCTTTTCT TTGAAGTCTT TTGCTTTCTT TAAATCTGTT GCTGTTGTTG TTTATGGGGT
  GGGCTATAGC CACAGCACAC ACGTGGGTGT CAGCAGACAA CTGTGCAGCA GTTGGTTCTC
  CTCCTTCCAA CGAGGAGATT CTGGGGTTCA AACTCAGGTC ACCATGTACA CTGAGTCAGC
  Y
  CATCGGACCT CTGTCCTTTC CATCCTGGAC AGCCCGAGCT CACATTTAAA GATCTATTCT
  GTATGGACTA GTCTGTAAAC TCTAAGGGAA CTTTGAGTGA GGGCTGAGCT AAGTTTTCAA
  TGAAAATATC TCCCTATATA GTCAAGTCTA ATGTGGACTG GGCCTATTTT ATTTTAGGAC
  TTGTGTCTGT GCCTCTCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50723217	NES14247820	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37104389					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50723217	NES14247820	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:66118471 () rs orientation: forward

Symbol	Name	Function Class
Dapk2	death-associated protein kinase 2	within coordinates
Rr401473	regulatory region 401473	940 bp upstream
Rr681677	regulatory region 681677	255 bp proximal
Rr681678	regulatory region 681678	993 bp proximal
Rr681679	regulatory region 681679	1515 bp proximal