rs3710453 SNP Detail

Summary

• ID
  rs3710453
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123130133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACC AGGCTTGGTC TAGAACTTTG
  Y
  GTGAGCCTCC TGCCTCTGTC TCCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss5086700	WI_WGS_5_121082057	WI	MOUSE	f	SNP	T			C
ss45827714	mCV24884187	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss149192266	ENSMUSSNP1039281	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss321670148	CHEV_5_123442079	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs3710453					SNP	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123130133 () rs orientation: forward

Symbol	Name	Function Class
A930024E05Rik	RIKEN cDNA A930024E05 gene	within coordinates
Gm44574	predicted gene 44574	within coordinates
Gm73435	predicted gene, 73435	595 bp downstream
Tssr48738	transcription start site region 48738	1301 bp downstream
Tssr48739	transcription start site region 48739	1290 bp downstream
Tssr48740	transcription start site region 48740	1245 bp downstream
Tssr48741	transcription start site region 48741	1206 bp downstream
Tssr53175	transcription start site region 53175	1780 bp upstream
Tssr53176	transcription start site region 53176	1663 bp upstream
Tssr53177	transcription start site region 53177	1607 bp upstream
Tssr53178	transcription start site region 53178	1575 bp upstream
Tssr53179	transcription start site region 53179	1541 bp upstream
Tssr53180	transcription start site region 53180	1497 bp upstream