rs37105616 SNP Detail

Summary

• ID
  rs37105616
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:95942367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTGTGCC TTGAAGAGCT
  GCACTCCACC TAGACCCATG CCAGGCAGGG CAGGGTGGTG GGAGCGTAGC AAGCAAGATC
  AGAAAGGACA GGAAGCAAAG ACTCAGCAAT TAAGTCTATG GGGCTGGTTC ACTTGGCCCA
  CTCGGAAGGC ACTCAGTCAT ACCATAGCCA GAGACTGCCT ACAGCCCATA CCGCAGCAGG
  Y
  ACCATCAACA GGACTTGGCG GCAGAAAGCT CAAGCAGGGT CAGAGGTATG CAGTGGGAGG
  GGCCAACGGG CTCCACTGAC TTGTCACTTT GACACAGCTG CTGAGGCAAG CGCTTCTGTC
  AGACCCGGCT CTAAAAGTCA AGGCCGCTGC TGAAGTCAGT GTGAGCTTTG ATCGTTCTGA
  GAGCCAGCTG CTTTAGTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51136727	NES14338330	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37105616					SNP	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51136727	NES14338330	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:95942367 () rs orientation: forward

Symbol	Name	Function Class
Iqgap2	IQ motif containing GTPase activating protein 2	within coordinates
Rr277718	regulatory region 277718	767 bp distal
Rr285448	regulatory region 285448	within coordinates