rs37108627 SNP Detail

Summary

• ID
  rs37108627
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70702969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAACCATTAG ACCAGGGTCT GATGAATTGC TCAGAATATT
  TCTGGACACC CAAATACAGA CCCTGGCTTA AGGCCCTGTC CATACAGTAG GTTTAGCTTG
  R
  CTACACCAAA GGAAGCCATA CAGAGGCTAA TATCAGAGTA TTCTTGGAAG AGACAGGAGA
  AAATGAAAGC CAGTTTCTGC TCTTACCTTA TGTGCTTGTG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51676662	NES14820446	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37108627					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676662	NES14820446	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70702969 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	461 bp downstream
Igk	immunoglobulin kappa chain complex	within coordinates
Igkc	immunoglobulin kappa constant	450 bp upstream
Rr158	regulatory region 158	34 bp distal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	550 bp downstream
Rr399685	regulatory region 399685	138 bp downstream
Rr399686	regulatory region 399686	526 bp upstream
Tssr1880	transcription start site region 1880	865 bp upstream
Tssr56956	transcription start site region 56956	152 bp downstream
Tssr56957	transcription start site region 56957	445 bp upstream
Tssr56958	transcription start site region 56958	492 bp upstream
Tssr56959	transcription start site region 56959	510 bp upstream
Tssr56960	transcription start site region 56960	533 bp upstream
Tssr56961	transcription start site region 56961	547 bp upstream
Tssr56962	transcription start site region 56962	555 bp upstream
Tssr56963	transcription start site region 56963	604 bp upstream
Tssr56964	transcription start site region 56964	619 bp upstream
Tssr56965	transcription start site region 56965	625 bp upstream
Tssr56966	transcription start site region 56966	636 bp upstream
Tssr56967	transcription start site region 56967	651 bp upstream
Tssr56968	transcription start site region 56968	675 bp upstream
Tssr56969	transcription start site region 56969	711 bp upstream
Tssr56970	transcription start site region 56970	724 bp upstream
Tssr56971	transcription start site region 56971	744 bp upstream
Tssr56972	transcription start site region 56972	770 bp upstream
Tssr56973	transcription start site region 56973	808 bp upstream
Tssr56974	transcription start site region 56974	840 bp upstream
Tssr56975	transcription start site region 56975	873 bp upstream
Tssr61321	transcription start site region 61321	497 bp downstream
Tssr61322	transcription start site region 61322	662 bp downstream
Tssr61323	transcription start site region 61323	677 bp downstream
Tssr61324	transcription start site region 61324	767 bp downstream
Tssr61325	transcription start site region 61325	833 bp downstream
Tssr61326	transcription start site region 61326	868 bp downstream
Tssr61327	transcription start site region 61327	882 bp downstream
Tssr61328	transcription start site region 61328	973 bp downstream