GGGGC TCACTGCGTT CTACCAGACC Y TGTAGAGGAA GGTGCAGTTC ACCAG Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss51394644 | NES14466016 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | T | T | C | T | T | T | T | T | |
ss145750740 | ENSMUSSNP7189369 | ENSEMBL | ENSEMBL_Sanger | f | SNP | T | C | |||||||||||
SNP Consensus Information | ||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
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rs37109984 | SNP | T | T | T | T | T | T | C | C | T | T | T | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss51394644 | NES14466016 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr1:153725465 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Teddm2 | transmembrane epididymal family member 2 | within coordinates | ||||||
Tssr14286 | transcription start site region 14286 | 1025 bp downstream | ||||||
Tssr14287 | transcription start site region 14287 | 1317 bp downstream | ||||||
Tssr14288 | transcription start site region 14288 | 1329 bp downstream | ||||||
Tssr14289 | transcription start site region 14289 | 1364 bp downstream | ||||||
Tssr14290 | transcription start site region 14290 | 1448 bp downstream | ||||||
Tssr14291 | transcription start site region 14291 | 1470 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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